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Bioinformatics operations, data types, formats, identifiers and topics
EDAM
All terms in EDAM
Label
Id
Description
Data reference
data_2093
[Reference to a dataset (or a cross-reference between two datasets), typically one or more entries in a biological database or ontology.]
igstrict
format_1943
[Intelligenetics sequence format (strict version).]
jackknifer
format_1944
[Jackknifer interleaved and non-interleaved sequence format.]
mase format
format_1945
[Mase program sequence format.]
Database entry version information
data_2090
[Information on a database (or ontology) entry version, such as name (or other identifier) or parent database, unique identifier of entry, data, author and so on.]
mega-seq
format_1946
[Mega interleaved and non-interleaved sequence format.]
giFASTA format
format_1940
[FASTA sequence format including NCBI-style GIs.]
hennig86
format_1941
[Hennig86 output sequence format.]
ig
format_1942
[Intelligenetics sequence format.]
GenBank format
format_1936
[Genbank entry format.]
GenBank-like format (text)
format_2205
[A text format resembling GenBank entry (plain text) format.]
genpept
format_1937
[Genpept protein entry format.]
GFF2-seq
format_1938
[GFF feature file format with sequence in the header.]
GFF3-seq
format_1939
[GFF3 feature file format with sequence.]
DNA base structural data
data_2088
[Structural data for DNA base pairs or runs of bases, such as energy or angle data.]
FASTQ-sanger
format_1932
[FASTQ short read format with phred quality.]
FASTQ-like format (text)
format_2182
[A text format resembling FASTQ short read format.]
FASTQ-solexa
format_1933
[FASTQ Solexa/Illumina 1.0 short read format.]
fitch program
format_1934
[Fitch program format.]
GCG
format_1935
[GCG sequence file format.]